To analyze spheroid experiments, researchers use plate readers, various microscopy techniques, or flow cytometry.
Transwell migration and invasion assays with tumor spheroids can be analyzed using microscopy with image capture, microscopy with direct counting, a plate reader, or flow cytometry.
Viability assays rely on differences between dead or dying and viable cells, such as the presence of apoptotic markers or the ability of live cells to metabolize certain molecules into a fluorescent or colored product. The cells in spheroids may need to be disaggregated into single cells before analysis.
To evaluate the penetration of drug-carrying nanoparticles or other therapeutic products into tumor spheroids, researchers have used flow cytometry, confocal microscopy, and various other microscopy techniques. For example, a research team used two-photon microscopy to analyze the ability of drug-delivery nanoparticles with different properties to penetrate deeply into tumor spheroids.
Another group of researchers first treated colorectal cancer spheroids with drug-carrying nanoparticles, then stained the spheroids with Hoechst 33342 dye, which stains cells closer to the exterior of the spheroids more strongly. After staining, the team disaggregated the spheroids and analyzed their nanoparticle content and staining strength via flow cytometry, thus determining each cell's location in the spheroid and the depth of penetration of the nanoparticles.